Software

Over the years I have contributed to the development of several tools and webservices:

APE-Gen

A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations. This is joint work with Jayvee Abella.

DINC

A web server for incremental molecular docking of large ligands and peptides. This is joint work with Didier Devaurs, Mark Moll, Sarah Hall-Swan, Ankur Dhanik and several others.

DockTope

An automated docking-based method for structural prediction of pMHC complexes. This is joint work with MaurĂ­cio Rigo, Gustavo Vieira, Marialva Sinigalia, Jason Greenbaum, Jason Yan and several others.

CrossTope

A curate repository of pMHC structures, focused on immunogenicity and cross-reactivity. This is joint work with MaurĂ­cio Rigo, Gustavo Vieira, Marialva Sinigalia and several others.